J5_7TOR_001

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

7TOR|1|A18S|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7TOR_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1086

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7TOR|1|A18S|C|30
7TOR|1|A18S|U|31
7TOR|1|A18S|U|32
7TOR|1|A18S|G|33
7TOR|1|A18S|U|34
*
7TOR|1|A18S|A|521
7TOR|1|A18S|A|522
7TOR|1|A18S|A|523
7TOR|1|A18S|U|524
7TOR|1|A18S|A|525
7TOR|1|A18S|A|526
7TOR|1|A18S|C|527
*
7TOR|1|A18S|G|558
7TOR|1|A18S|G|559
7TOR|1|A18S|A|560
7TOR|1|A18S|A|561
7TOR|1|A18S|U|562
7TOR|1|A18S|G|563
*
7TOR|1|A18S|C|592
7TOR|1|A18S|C|593
7TOR|1|A18S|A|594
7TOR|1|A18S|U|595
*
7TOR|1|A18S|A|641
7TOR|1|A18S|U|642
7TOR|1|A18S|A|643
7TOR|1|A18S|G|644

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS09

40S ribosomal protein S9

Chain AS23

40S ribosomal protein S23

Chain AS30

40S ribosomal protein S30