J5_7TOS_003
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7TOS|1|16S|A|60, 7TOS|1|16S|A|109, 7TOS|1|16S|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7TOS_003 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1089
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7TOS|1|16S|C|58
7TOS|1|16S|A|59
7TOS|1|16S|A|60
7TOS|1|16S|G|61
*
7TOS|1|16S|C|106
7TOS|1|16S|G|107
7TOS|1|16S|G|108
7TOS|1|16S|A|109
7TOS|1|16S|C|110
7TOS|1|16S|G|111
7TOS|1|16S|G|112
7TOS|1|16S|G|113
*
7TOS|1|16S|C|314
7TOS|1|16S|A|315
7TOS|1|16S|C|316
*
7TOS|1|16S|G|337
7TOS|1|16S|A|338
7TOS|1|16S|C|339
*
7TOS|1|16S|G|350
7TOS|1|16S|G|351
7TOS|1|16S|C|352
7TOS|1|16S|A|353
7TOS|1|16S|G|354
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain L14
- 50S ribosomal protein L14
- Chain L19
- 50S ribosomal protein L19
- Chain S16
- 30S ribosomal protein S16
- Chain S20
- 30S ribosomal protein S20
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