J5_7TTW_001

3D structure

PDB id

7TTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus containing double mutation in uL3 imparting linezolid resistance

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7TTW|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7TTW_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1054

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7TTW|1|1|C|47
7TTW|1|1|G|48
7TTW|1|1|A|49
7TTW|1|1|U|50
7TTW|1|1|G|51
7TTW|1|1|A|52
7TTW|1|1|A|53
7TTW|1|1|G|54
*
7TTW|1|1|C|115
7TTW|1|1|G|116
7TTW|1|1|A|117
7TTW|1|1|A|118
7TTW|1|1|U|119
7TTW|1|1|G|120
*
7TTW|1|1|C|129
7TTW|1|1|A|130
*
7TTW|1|1|U|149
7TTW|1|1|A|150
7TTW|1|1|U|151
*
7TTW|1|1|A|178
7TTW|1|1|A|179
7TTW|1|1|G|180

Current chains

Chain 1

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L34