J5_7U2J_001

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

7U2J|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7U2J_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0466

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7U2J|1|1A|C|47
7U2J|1|1A|G|48
7U2J|1|1A|A|49
7U2J|1|1A|U|50
7U2J|1|1A|G|51
7U2J|1|1A|A|52
7U2J|1|1A|A|53
7U2J|1|1A|G|54
*
7U2J|1|1A|C|116
7U2J|1|1A|G|117
7U2J|1|1A|A|118
7U2J|1|1A|A|119
7U2J|1|1A|U|120
7U2J|1|1A|G|121
*
7U2J|1|1A|C|130
7U2J|1|1A|G|131
*
7U2J|1|1A|C|148
7U2J|1|1A|A|149
7U2J|1|1A|C|150
*
7U2J|1|1A|G|176
7U2J|1|1A|G|177
7U2J|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23