J5_7UCJ_006
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 7UCJ|1|9|C|593
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UCJ_006 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.093
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7UCJ|1|9|C|30
7UCJ|1|9|U|31
7UCJ|1|9|U|32
7UCJ|1|9|G|33
7UCJ|1|9|U|34
*
7UCJ|1|9|A|521
7UCJ|1|9|A|522
7UCJ|1|9|A|523
7UCJ|1|9|U|524
7UCJ|1|9|A|525
7UCJ|1|9|A|526
7UCJ|1|9|C|527
*
7UCJ|1|9|G|558
7UCJ|1|9|G|559
7UCJ|1|9|A|560
7UCJ|1|9|A|561
7UCJ|1|9|U|562
7UCJ|1|9|G|563
*
7UCJ|1|9|C|592
7UCJ|1|9|C|593
7UCJ|1|9|A|594
7UCJ|1|9|U|595
*
7UCJ|1|9|A|641
7UCJ|1|9|U|642
7UCJ|1|9|A|643
7UCJ|1|9|OMG|644
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain Ee
- 40S ribosomal protein S30
- Chain JJ
- 40S ribosomal protein S9
- Chain XX
- 40S ribosomal protein S23
Coloring options: