J5_7UNU_009
3D structure
- PDB id
- 7UNU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7UNU|1|a|A|60, 7UNU|1|a|A|103, 7UNU|1|a|C|346
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UNU_009 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0903
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7UNU|1|a|C|58
7UNU|1|a|A|59
7UNU|1|a|A|60
7UNU|1|a|G|61
*
7UNU|1|a|C|100
7UNU|1|a|G|101
7UNU|1|a|G|102
7UNU|1|a|A|103
7UNU|1|a|C|104
7UNU|1|a|G|105
7UNU|1|a|G|106
7UNU|1|a|G|107
*
7UNU|1|a|C|308
7UNU|1|a|A|309
7UNU|1|a|C|310
*
7UNU|1|a|G|331
7UNU|1|a|A|332
7UNU|1|a|C|333
*
7UNU|1|a|G|344
7UNU|1|a|G|345
7UNU|1|a|C|346
7UNU|1|a|A|347
7UNU|1|a|G|348
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L14
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
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