J5_7UNV_002
3D structure
- PDB id
- 7UNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 7UNV|1|A|A|523, 7UNV|1|A|U|552
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UNV_002 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0764
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7UNV|1|A|C|522
7UNV|1|A|A|523
7UNV|1|A|G|524
*
7UNV|1|A|C|550
7UNV|1|A|G|551
7UNV|1|A|U|552
7UNV|1|A|A|553
7UNV|1|A|C|554
*
7UNV|1|A|G|567
7UNV|1|A|G|568
7UNV|1|A|G|569
*
7UNV|1|A|C|1248
7UNV|1|A|A|1249
*
7UNV|1|A|U|2004
7UNV|1|A|G|2005
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L21
- Chain U
- 50S ribosomal protein L22
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