J5_7UNW_003
3D structure
- PDB id
- 7UNW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 7UNW|1|A|U|1242
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UNW_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0613
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7UNW|1|A|C|574
7UNW|1|A|G|575
7UNW|1|A|A|576
7UNW|1|A|C|577
7UNW|1|A|U|578
7UNW|1|A|U|579
*
7UNW|1|A|A|658
7UNW|1|A|G|659
7UNW|1|A|A|660
7UNW|1|A|C|661
*
7UNW|1|A|G|799
7UNW|1|A|U|800
7UNW|1|A|U|801
7UNW|1|A|C|802
*
7UNW|1|A|G|1182
7UNW|1|A|C|1183
*
7UNW|1|A|G|1237
7UNW|1|A|C|1238
7UNW|1|A|G|1239
7UNW|1|A|A|1240
7UNW|1|A|A|1241
7UNW|1|A|U|1242
7UNW|1|A|G|1243
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L15
- Chain S
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L21
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