J5_7UVW_009

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7UVW|1|a|A|62, 7UVW|1|a|A|105, 7UVW|1|a|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7UVW_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0944

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.2

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

7UVW|1|a|C|60
7UVW|1|a|A|61
7UVW|1|a|A|62
7UVW|1|a|G|63
*
7UVW|1|a|C|102
7UVW|1|a|G|103
7UVW|1|a|G|104
7UVW|1|a|A|105
7UVW|1|a|C|106
7UVW|1|a|G|107
7UVW|1|a|G|108
7UVW|1|a|G|109
*
7UVW|1|a|C|310
7UVW|1|a|A|311
7UVW|1|a|C|312
*
7UVW|1|a|G|333
7UVW|1|a|A|334
7UVW|1|a|C|335
*
7UVW|1|a|G|346
7UVW|1|a|G|347
7UVW|1|a|C|348
7UVW|1|a|A|349
7UVW|1|a|G|350

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20