J5_7UVY_009

3D structure

PDB id

7UVY (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7UVY|1|a|A|105, 7UVY|1|a|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7UVY_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0918

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.2

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

7UVY|1|a|C|60
7UVY|1|a|A|61
7UVY|1|a|A|62
7UVY|1|a|G|63
*
7UVY|1|a|C|102
7UVY|1|a|G|103
7UVY|1|a|G|104
7UVY|1|a|A|105
7UVY|1|a|C|106
7UVY|1|a|G|107
7UVY|1|a|G|108
7UVY|1|a|G|109
*
7UVY|1|a|C|310
7UVY|1|a|A|311
7UVY|1|a|C|312
*
7UVY|1|a|G|333
7UVY|1|a|A|334
7UVY|1|a|C|335
*
7UVY|1|a|G|346
7UVY|1|a|G|347
7UVY|1|a|C|348
7UVY|1|a|A|349
7UVY|1|a|G|350

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20