J5_7WTL_001
3D structure
- PDB id
- 7WTL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 7WTL|1|C2|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7WTL_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1432
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7WTL|1|C2|C|31
7WTL|1|C2|U|32
7WTL|1|C2|U|33
7WTL|1|C2|G|34
7WTL|1|C2|U|35
*
7WTL|1|C2|A|473
7WTL|1|C2|A|474
7WTL|1|C2|A|475
7WTL|1|C2|U|476
7WTL|1|C2|A|477
7WTL|1|C2|A|478
7WTL|1|C2|C|479
*
7WTL|1|C2|G|509
7WTL|1|C2|G|510
7WTL|1|C2|A|511
7WTL|1|C2|A|512
7WTL|1|C2|U|513
7WTL|1|C2|G|514
*
7WTL|1|C2|C|543
7WTL|1|C2|A|544
7WTL|1|C2|A|545
7WTL|1|C2|U|546
*
7WTL|1|C2|A|592
7WTL|1|C2|U|593
7WTL|1|C2|A|594
7WTL|1|C2|G|595
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain SJ
- 40S ribosomal protein S9-A
- Chain SX
- 40S ribosomal protein S23-A
- Chain UC
- Something about silencing protein 10
Coloring options: