3D structure

PDB id
7WTM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CAUG*CGAAUGGC*GAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
7WTM|1|C2|A|93, 7WTM|1|C2|C|424
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7WTM_002 not in the Motif Atlas
Homologous match to J5_8C3A_020
Geometric discrepancy: 0.0685
The information below is about J5_8C3A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.4
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

7WTM|1|C2|C|54
7WTM|1|C2|A|55
7WTM|1|C2|U|56
7WTM|1|C2|G|57
*
7WTM|1|C2|C|90
7WTM|1|C2|G|91
7WTM|1|C2|A|92
7WTM|1|C2|A|93
7WTM|1|C2|U|94
7WTM|1|C2|G|95
7WTM|1|C2|G|96
7WTM|1|C2|C|97
*
7WTM|1|C2|G|386
7WTM|1|C2|A|387
7WTM|1|C2|G|388
*
7WTM|1|C2|C|409
7WTM|1|C2|A|410
7WTM|1|C2|C|411
*
7WTM|1|C2|G|422
7WTM|1|C2|G|423
7WTM|1|C2|C|424
7WTM|1|C2|A|425
7WTM|1|C2|G|426

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SE
40S ribosomal protein S4-A
Chain SG
40S ribosomal protein S6-A
Chain SI
40S ribosomal protein S8-A
Chain SJ
40S ribosomal protein S9-A
Chain SY
40S ribosomal protein S24-A

Coloring options:


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