J5_7WTN_001

3D structure

PDB id

7WTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

7WTN|1|C2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7WTN_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.101

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7WTN|1|C2|C|31
7WTN|1|C2|U|32
7WTN|1|C2|U|33
7WTN|1|C2|G|34
7WTN|1|C2|U|35
*
7WTN|1|C2|A|473
7WTN|1|C2|A|474
7WTN|1|C2|A|475
7WTN|1|C2|U|476
7WTN|1|C2|A|477
7WTN|1|C2|A|478
7WTN|1|C2|C|479
*
7WTN|1|C2|G|509
7WTN|1|C2|G|510
7WTN|1|C2|A|511
7WTN|1|C2|A|512
7WTN|1|C2|U|513
7WTN|1|C2|G|514
*
7WTN|1|C2|C|543
7WTN|1|C2|A|544
7WTN|1|C2|A|545
7WTN|1|C2|U|546
*
7WTN|1|C2|A|592
7WTN|1|C2|U|593
7WTN|1|C2|A|594
7WTN|1|C2|G|595

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A