J5_7WTO_001

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

7WTO|1|C2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7WTO_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1071

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7WTO|1|C2|C|31
7WTO|1|C2|U|32
7WTO|1|C2|U|33
7WTO|1|C2|G|34
7WTO|1|C2|U|35
*
7WTO|1|C2|A|473
7WTO|1|C2|A|474
7WTO|1|C2|A|475
7WTO|1|C2|U|476
7WTO|1|C2|A|477
7WTO|1|C2|A|478
7WTO|1|C2|C|479
*
7WTO|1|C2|G|509
7WTO|1|C2|G|510
7WTO|1|C2|A|511
7WTO|1|C2|A|512
7WTO|1|C2|U|513
7WTO|1|C2|G|514
*
7WTO|1|C2|C|543
7WTO|1|C2|A|544
7WTO|1|C2|A|545
7WTO|1|C2|U|546
*
7WTO|1|C2|A|592
7WTO|1|C2|U|593
7WTO|1|C2|A|594
7WTO|1|C2|G|595

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A