J5_7WTP_001

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

7WTP|1|C2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7WTP_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0954

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7WTP|1|C2|C|31
7WTP|1|C2|U|32
7WTP|1|C2|U|33
7WTP|1|C2|G|34
7WTP|1|C2|U|35
*
7WTP|1|C2|A|473
7WTP|1|C2|A|474
7WTP|1|C2|A|475
7WTP|1|C2|U|476
7WTP|1|C2|A|477
7WTP|1|C2|A|478
7WTP|1|C2|C|479
*
7WTP|1|C2|G|509
7WTP|1|C2|G|510
7WTP|1|C2|A|511
7WTP|1|C2|A|512
7WTP|1|C2|U|513
7WTP|1|C2|G|514
*
7WTP|1|C2|C|543
7WTP|1|C2|A|544
7WTP|1|C2|A|545
7WTP|1|C2|U|546
*
7WTP|1|C2|A|592
7WTP|1|C2|U|593
7WTP|1|C2|A|594
7WTP|1|C2|G|595

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A