J5_7WTQ_001

3D structure

PDB id

7WTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

7WTQ|1|C2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7WTQ_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1043

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7WTQ|1|C2|C|31
7WTQ|1|C2|U|32
7WTQ|1|C2|U|33
7WTQ|1|C2|G|34
7WTQ|1|C2|U|35
*
7WTQ|1|C2|A|473
7WTQ|1|C2|A|474
7WTQ|1|C2|A|475
7WTQ|1|C2|U|476
7WTQ|1|C2|A|477
7WTQ|1|C2|A|478
7WTQ|1|C2|C|479
*
7WTQ|1|C2|G|509
7WTQ|1|C2|G|510
7WTQ|1|C2|A|511
7WTQ|1|C2|A|512
7WTQ|1|C2|U|513
7WTQ|1|C2|G|514
*
7WTQ|1|C2|C|543
7WTQ|1|C2|A|544
7WTQ|1|C2|A|545
7WTQ|1|C2|U|546
*
7WTQ|1|C2|A|592
7WTQ|1|C2|U|593
7WTQ|1|C2|A|594
7WTQ|1|C2|G|595

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A