J5_7XNY_008
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7XNY|1|S2|A|92, 7XNY|1|S2|C|472
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7XNY_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0625
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7XNY|1|S2|C|53
7XNY|1|S2|A|54
7XNY|1|S2|U|55
7XNY|1|S2|G|56
*
7XNY|1|S2|C|89
7XNY|1|S2|G|90
7XNY|1|S2|A|91
7XNY|1|S2|A|92
7XNY|1|S2|U|93
7XNY|1|S2|G|94
7XNY|1|S2|G|95
7XNY|1|S2|C|96
*
7XNY|1|S2|G|434
7XNY|1|S2|A|435
7XNY|1|S2|OMG|436
*
7XNY|1|S2|C|457
7XNY|1|S2|A|458
7XNY|1|S2|C|459
*
7XNY|1|S2|G|470
7XNY|1|S2|G|471
7XNY|1|S2|C|472
7XNY|1|S2|A|473
7XNY|1|S2|G|474
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LV
- 60S ribosomal protein L23
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: