J5_7Y41_001

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

7Y41|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7Y41_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0842

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7Y41|1|A|C|44
7Y41|1|A|G|45
7Y41|1|A|A|46
7Y41|1|A|U|47
7Y41|1|A|G|48
7Y41|1|A|A|49
7Y41|1|A|A|50
7Y41|1|A|G|51
*
7Y41|1|A|C|113
7Y41|1|A|G|114
7Y41|1|A|A|115
7Y41|1|A|A|116
7Y41|1|A|U|117
7Y41|1|A|G|118
*
7Y41|1|A|C|127
7Y41|1|A|G|128
*
7Y41|1|A|C|147
7Y41|1|A|A|148
7Y41|1|A|C|149
*
7Y41|1|A|G|175
7Y41|1|A|G|176
7Y41|1|A|G|177

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34