J5_7Y7G_009

3D structure

PDB id

7Y7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.34 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

7Y7G|1|a|U|2076, 7Y7G|1|a|G|2428, 7Y7G|1|a|G|2429, 7Y7G|1|a|A|2430, 7Y7G|1|a|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7Y7G_009 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.0661

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7Y7G|1|a|U|2074
7Y7G|1|a|U|2075
7Y7G|1|a|U|2076
7Y7G|1|a|A|2077
*
7Y7G|1|a|U|2243
7Y7G|1|a|U|2244
7Y7G|1|a|U|2245
7Y7G|1|a|G|2246
*
7Y7G|1|a|C|2258
7Y7G|1|a|U|2259
*
7Y7G|1|a|A|2281
7Y7G|1|a|G|2282
*
7Y7G|1|a|C|2427
7Y7G|1|a|G|2428
7Y7G|1|a|G|2429
7Y7G|1|a|A|2430
7Y7G|1|a|U|2431
7Y7G|1|a|A|2432
7Y7G|1|a|A|2433
7Y7G|1|a|A|2434
7Y7G|1|a|A|2435

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L33

Chain 2

50S ribosomal protein L35

Chain c

50S ribosomal protein L2

Chain k

50S ribosomal protein L15

Chain v

50S ribosomal protein L27

Chain w

50S ribosomal protein L28