J5_7Z20_004
3D structure
- PDB id
- 7Z20 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.29 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 7Z20|1|b|U|1757, 7Z20|1|b|G|1762
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7Z20_004 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0542
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7Z20|1|b|G|1673
7Z20|1|b|C|1674
7Z20|1|b|A|1675
7Z20|1|b|A|1676
7Z20|1|b|A|1677
7Z20|1|b|A|1678
7Z20|1|b|U|1679
7Z20|1|b|G|1680
7Z20|1|b|G|1681
*
7Z20|1|b|C|1705
7Z20|1|b|G|1706
*
7Z20|1|b|U|1750
7Z20|1|b|C|1751
*
7Z20|1|b|G|1755
7Z20|1|b|A|1756
7Z20|1|b|U|1757
7Z20|1|b|A|1758
7Z20|1|b|C|1759
7Z20|1|b|C|1760
7Z20|1|b|A|1761
7Z20|1|b|G|1762
7Z20|1|b|C|1763
*
7Z20|1|b|G|1987
7Z20|1|b|G|1988
7Z20|1|b|C|1989
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
- Chain p
- 50S ribosomal protein L19
Coloring options: