3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
Length
23 nucleotides
Bulged bases
7ZJW|1|S2|U|55, 7ZJW|1|S2|A|92, 7ZJW|1|S2|C|473
QA status
Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7ZJW_009 not in the Motif Atlas
Homologous match to J5_8C3A_020
Geometric discrepancy: 0.1099
The information below is about J5_8C3A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.4
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

7ZJW|1|S2|C|53
7ZJW|1|S2|A|54
7ZJW|1|S2|U|55
7ZJW|1|S2|G|56
*
7ZJW|1|S2|C|89
7ZJW|1|S2|G|90
7ZJW|1|S2|A|91
7ZJW|1|S2|A|92
7ZJW|1|S2|PSU|93
7ZJW|1|S2|G|94
7ZJW|1|S2|G|95
7ZJW|1|S2|C|96
*
7ZJW|1|S2|G|435
7ZJW|1|S2|A|436
7ZJW|1|S2|OMG|437
*
7ZJW|1|S2|C|458
7ZJW|1|S2|A|459
7ZJW|1|S2|C|460
*
7ZJW|1|S2|G|471
7ZJW|1|S2|G|472
7ZJW|1|S2|C|473
7ZJW|1|S2|A|474
7ZJW|1|S2|G|475

Current chains

Chain S2
18S rRNA

Nearby chains

Chain E
eEFSec
Chain LY
60S ribosomal protein L23
Chain SP
40S ribosomal protein eS4
Chain SR
40S ribosomal protein S6
Chain ST
40S ribosomal protein S8
Chain SU
40S ribosomal protein S9
Chain Sj
40S ribosomal protein S24

Coloring options:


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