J5_7ZPQ_008
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 7ZPQ|1|5|U|719, 7ZPQ|1|5|A|784, 7ZPQ|1|5|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZPQ_008 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0591
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7ZPQ|1|5|C|675
7ZPQ|1|5|G|676
7ZPQ|1|5|A|677
7ZPQ|1|5|G|678
*
7ZPQ|1|5|C|702
7ZPQ|1|5|G|703
7ZPQ|1|5|U|704
7ZPQ|1|5|A|705
7ZPQ|1|5|A|706
*
7ZPQ|1|5|U|713
7ZPQ|1|5|G|714
7ZPQ|1|5|A|715
7ZPQ|1|5|A|716
7ZPQ|1|5|C|717
7ZPQ|1|5|G|718
7ZPQ|1|5|U|719
7ZPQ|1|5|A|720
7ZPQ|1|5|G|721
*
7ZPQ|1|5|C|749
7ZPQ|1|5|G|750
7ZPQ|1|5|A|751
*
7ZPQ|1|5|U|782
7ZPQ|1|5|A|783
7ZPQ|1|5|A|784
7ZPQ|1|5|G|785
7ZPQ|1|5|A|786
7ZPQ|1|5|G|787
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BC
- RPL4A isoform 1
- Chain BK
- 60S ribosomal protein L13-A
- Chain BP
- 60S ribosomal protein L18-A
- Chain BZ
- 60S ribosomal protein L28
- Chain Ba
- 60S ribosomal protein L29
- Chain Bh
- 60S ribosomal protein L36-A
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