J5_7ZQ5_002

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

7ZQ5|1|b|A|532, 7ZQ5|1|b|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ZQ5_002 not in the Motif Atlas

Homologous match to J5_5J7L_014

Geometric discrepancy: 0.0628

The information below is about J5_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7ZQ5|1|b|C|531
7ZQ5|1|b|A|532
7ZQ5|1|b|G|533
*
7ZQ5|1|b|C|560
7ZQ5|1|b|G|561
7ZQ5|1|b|U|562
7ZQ5|1|b|A|563
7ZQ5|1|b|C|564
*
7ZQ5|1|b|G|577
7ZQ5|1|b|G|578
7ZQ5|1|b|G|579
*
7ZQ5|1|b|C|1261
7ZQ5|1|b|A|1262
*
7ZQ5|1|b|U|2017
7ZQ5|1|b|G|2018

Current chains

Chain b

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L32

Chain e

50S ribosomal protein L4

Chain q

50S ribosomal protein L20

Chain r

50S ribosomal protein L21

Chain s

50S ribosomal protein L22