J5_7ZQ6_004

3D structure

PDB id

7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7ZQ6|1|b|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ZQ6_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0603

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZQ6|1|b|G|1674
7ZQ6|1|b|C|1675
7ZQ6|1|b|A|1676
7ZQ6|1|b|A|1677
7ZQ6|1|b|A|1678
7ZQ6|1|b|A|1679
7ZQ6|1|b|U|1680
7ZQ6|1|b|G|1681
7ZQ6|1|b|G|1682
*
7ZQ6|1|b|C|1706
7ZQ6|1|b|G|1707
*
7ZQ6|1|b|U|1751
7ZQ6|1|b|C|1752
*
7ZQ6|1|b|G|1756
7ZQ6|1|b|A|1757
7ZQ6|1|b|U|1758
7ZQ6|1|b|A|1759
7ZQ6|1|b|C|1760
7ZQ6|1|b|C|1761
7ZQ6|1|b|A|1762
7ZQ6|1|b|G|1763
7ZQ6|1|b|C|1764
*
7ZQ6|1|b|G|1988
7ZQ6|1|b|G|1989
7ZQ6|1|b|C|1990

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain k

50S ribosomal protein L14

Chain p

50S ribosomal protein L19