J5_7ZTA_007

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7ZTA|1|23S1|U|1758, 7ZTA|1|23S1|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ZTA_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0602

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZTA|1|23S1|G|1674
7ZTA|1|23S1|C|1675
7ZTA|1|23S1|A|1676
7ZTA|1|23S1|A|1677
7ZTA|1|23S1|A|1678
7ZTA|1|23S1|A|1679
7ZTA|1|23S1|U|1680
7ZTA|1|23S1|G|1681
7ZTA|1|23S1|G|1682
*
7ZTA|1|23S1|C|1706
7ZTA|1|23S1|G|1707
*
7ZTA|1|23S1|U|1751
7ZTA|1|23S1|C|1752
*
7ZTA|1|23S1|G|1756
7ZTA|1|23S1|A|1757
7ZTA|1|23S1|U|1758
7ZTA|1|23S1|A|1759
7ZTA|1|23S1|C|1760
7ZTA|1|23S1|C|1761
7ZTA|1|23S1|A|1762
7ZTA|1|23S1|G|1763
7ZTA|1|23S1|C|1764
*
7ZTA|1|23S1|G|1988
7ZTA|1|23S1|G|1989
7ZTA|1|23S1|C|1990

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain 16S1

Small subunit ribosomal RNA; SSU rRNA

Chain L031

50S ribosomal protein L3

Chain L141

50S ribosomal protein L14

Chain L191

50S ribosomal protein L19