J5_7ZUW_009
3D structure
- PDB id
- 7ZUW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 7ZUW|1|5|U|720, 7ZUW|1|5|A|785, 7ZUW|1|5|G|786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZUW_009 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0824
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7ZUW|1|5|C|676
7ZUW|1|5|G|677
7ZUW|1|5|A|678
7ZUW|1|5|G|679
*
7ZUW|1|5|C|703
7ZUW|1|5|G|704
7ZUW|1|5|U|705
7ZUW|1|5|A|706
7ZUW|1|5|A|707
*
7ZUW|1|5|U|714
7ZUW|1|5|G|715
7ZUW|1|5|A|716
7ZUW|1|5|A|717
7ZUW|1|5|C|718
7ZUW|1|5|G|719
7ZUW|1|5|U|720
7ZUW|1|5|A|721
7ZUW|1|5|G|722
*
7ZUW|1|5|C|750
7ZUW|1|5|G|751
7ZUW|1|5|A|752
*
7ZUW|1|5|U|783
7ZUW|1|5|A|784
7ZUW|1|5|A|785
7ZUW|1|5|G|786
7ZUW|1|5|A|787
7ZUW|1|5|G|788
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BC
- RPL4A isoform 1
- Chain BK
- 60S ribosomal protein L13-A
- Chain BP
- 60S ribosomal protein L18-A
- Chain BZ
- 60S ribosomal protein L28
- Chain Ba
- 60S ribosomal protein L29
- Chain Bh
- 60S ribosomal protein L36-A
Coloring options: