J5_7ZUX_001

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

7ZUX|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ZUX_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0826

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7ZUX|1|2|C|31
7ZUX|1|2|U|32
7ZUX|1|2|U|33
7ZUX|1|2|G|34
7ZUX|1|2|U|35
*
7ZUX|1|2|A|473
7ZUX|1|2|A|474
7ZUX|1|2|A|475
7ZUX|1|2|U|476
7ZUX|1|2|A|477
7ZUX|1|2|A|478
7ZUX|1|2|C|479
*
7ZUX|1|2|G|509
7ZUX|1|2|G|510
7ZUX|1|2|A|511
7ZUX|1|2|A|512
7ZUX|1|2|U|513
7ZUX|1|2|G|514
*
7ZUX|1|2|C|543
7ZUX|1|2|A|544
7ZUX|1|2|A|545
7ZUX|1|2|U|546
*
7ZUX|1|2|A|592
7ZUX|1|2|U|593
7ZUX|1|2|A|594
7ZUX|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DJ

40S ribosomal protein S9-A

Chain DX

40S ribosomal protein S23-A

Chain De

40S ribosomal protein S30-A