3D structure

PDB id
8AGU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state E
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
Length
27 nucleotides
Bulged bases
8AGU|1|f|U|719, 8AGU|1|f|A|784, 8AGU|1|f|G|785
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8AGU_003 not in the Motif Atlas
Homologous match to J5_8P9A_012
Geometric discrepancy: 0.0558
The information below is about J5_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_23272.1
Basepair signature
cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8AGU|1|f|C|675
8AGU|1|f|G|676
8AGU|1|f|A|677
8AGU|1|f|G|678
*
8AGU|1|f|C|702
8AGU|1|f|G|703
8AGU|1|f|U|704
8AGU|1|f|A|705
8AGU|1|f|A|706
*
8AGU|1|f|U|713
8AGU|1|f|G|714
8AGU|1|f|A|715
8AGU|1|f|A|716
8AGU|1|f|C|717
8AGU|1|f|G|718
8AGU|1|f|U|719
8AGU|1|f|A|720
8AGU|1|f|G|721
*
8AGU|1|f|C|749
8AGU|1|f|G|750
8AGU|1|f|A|751
*
8AGU|1|f|U|782
8AGU|1|f|A|783
8AGU|1|f|A|784
8AGU|1|f|G|785
8AGU|1|f|A|786
8AGU|1|f|G|787

Current chains

Chain f
25S rRNA

Nearby chains

Chain D
60S ribosomal protein L18-A
Chain N
60S ribosomal protein L28
Chain O
60S ribosomal protein L29
Chain V
60S ribosomal protein L36-A
Chain l
BJ4_G0008850.mRNA.1.CDS.1
Chain t
60S ribosomal protein L13-A

Coloring options:


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