J5_8B0X_005
3D structure
- PDB id
- 8B0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 70S ribosome in the unrotated state (P and E, tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 8B0X|1|a|A|532, 8B0X|1|a|U|564
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8B0X_005 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0376
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8B0X|1|a|C|531
8B0X|1|a|A|532
8B0X|1|a|G|533
*
8B0X|1|a|C|562
8B0X|1|a|G|563
8B0X|1|a|U|564
8B0X|1|a|A|565
8B0X|1|a|C|566
*
8B0X|1|a|G|579
8B0X|1|a|G|580
8B0X|1|a|G|581
*
8B0X|1|a|C|1263
8B0X|1|a|A|1264
*
8B0X|1|a|U|2021
8B0X|1|a|G|2022
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain i
- 50S ribosomal protein L13
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
- Chain r
- 50S ribosomal protein L22
- Chain z
- 50S ribosomal protein L32
Coloring options: