J5_8B2L_004
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAAAAUGG*UG*UG*CGGACAAG(OMG)*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8B2L|1|A3|G|2120, 8B2L|1|A3|G|2125
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8B2L_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0619
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
8B2L|1|A3|G|1912
8B2L|1|A3|C|1913
8B2L|1|A3|A|1914
8B2L|1|A3|A|1915
8B2L|1|A3|A|1916
8B2L|1|A3|A|1917
8B2L|1|A3|U|1918
8B2L|1|A3|G|1919
8B2L|1|A3|G|1920
*
8B2L|1|A3|U|1944
8B2L|1|A3|G|1945
*
8B2L|1|A3|U|2113
8B2L|1|A3|G|2114
*
8B2L|1|A3|C|2118
8B2L|1|A3|G|2119
8B2L|1|A3|G|2120
8B2L|1|A3|A|2121
8B2L|1|A3|C|2122
8B2L|1|A3|A|2123
8B2L|1|A3|A|2124
8B2L|1|A3|G|2125
8B2L|1|A3|OMG|2126
*
8B2L|1|A3|C|2334
8B2L|1|A3|A|2335
8B2L|1|A3|C|2336
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain H3
- Ribosomal protein L19
- Chain L3
- 60S ribosomal protein L24-like
- Chain P1
- 40S ribosomal protein S8
- Chain e3
- 60S ribosomal protein L23
- Chain r3
- uL3 (60S ribosomal protein L3)
Coloring options: