J5_8B2L_009
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8B2L|1|h1|A|94, 8B2L|1|h1|C|428
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8B2L_009 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.117
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8B2L|1|h1|C|54
8B2L|1|h1|A|55
8B2L|1|h1|U|56
8B2L|1|h1|G|57
*
8B2L|1|h1|C|91
8B2L|1|h1|G|92
8B2L|1|h1|A|93
8B2L|1|h1|A|94
8B2L|1|h1|PSU|95
8B2L|1|h1|G|96
8B2L|1|h1|G|97
8B2L|1|h1|C|98
*
8B2L|1|h1|G|390
8B2L|1|h1|A|391
8B2L|1|h1|OMG|392
*
8B2L|1|h1|C|413
8B2L|1|h1|A|414
8B2L|1|h1|C|415
*
8B2L|1|h1|G|426
8B2L|1|h1|G|427
8B2L|1|h1|C|428
8B2L|1|h1|A|429
8B2L|1|h1|G|430
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A1
- 40S ribosomal protein S4
- Chain H1
- 40S ribosomal protein S24
- Chain P1
- 40S ribosomal protein S8
- Chain b1
- 40S ribosomal protein S9-2-like
- Chain e3
- 60S ribosomal protein L23
- Chain k1
- 40S ribosomal protein S6
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