J5_8B5L_002
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GGAGUC*GGAC*G(I4U)UC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 8B5L|1|5|C|2132, 8B5L|1|5|U|2193
- QA status
- Modified nucleotides: I4U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8B5L_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0671
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|G|1279
8B5L|1|5|G|1280
8B5L|1|5|A|1281
8B5L|1|5|G|1282
8B5L|1|5|U|1283
8B5L|1|5|C|1284
*
8B5L|1|5|G|1471
8B5L|1|5|G|1472
8B5L|1|5|A|1473
8B5L|1|5|C|1474
*
8B5L|1|5|G|1613
8B5L|1|5|I4U|1614
8B5L|1|5|U|1615
8B5L|1|5|C|1616
*
8B5L|1|5|G|2131
8B5L|1|5|C|2132
8B5L|1|5|C|2133
*
8B5L|1|5|G|2188
8B5L|1|5|C|2189
8B5L|1|5|A|2190
8B5L|1|5|G|2191
8B5L|1|5|A|2192
8B5L|1|5|U|2193
8B5L|1|5|C|2194
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain e
- Ribosomal protein L32
- Chain r
- 60S ribosomal protein L28
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