J5_8BF7_002
3D structure
- PDB id
- 8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 8BF7|1|0|A|532, 8BF7|1|0|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BF7_002 not in the Motif Atlas
- Homologous match to J5_4WF9_003
- Geometric discrepancy: 0.1508
- The information below is about J5_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BF7|1|0|C|531
8BF7|1|0|A|532
8BF7|1|0|G|533
*
8BF7|1|0|C|560
8BF7|1|0|G|561
8BF7|1|0|U|562
8BF7|1|0|A|563
8BF7|1|0|C|564
*
8BF7|1|0|G|577
8BF7|1|0|G|578
8BF7|1|0|G|579
*
8BF7|1|0|C|1261
8BF7|1|0|A|1262
*
8BF7|1|0|U|2017
8BF7|1|0|G|2018
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
- Chain P
- 50S ribosomal protein L22
- Chain a
- 50S ribosomal protein L32
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