J5_8BF7_003
3D structure
- PDB id
- 8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8BF7|1|0|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BF7_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.1202
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8BF7|1|0|C|584
8BF7|1|0|G|585
8BF7|1|0|A|586
8BF7|1|0|C|587
8BF7|1|0|U|588
8BF7|1|0|U|589
*
8BF7|1|0|A|668
8BF7|1|0|G|669
8BF7|1|0|A|670
8BF7|1|0|C|671
*
8BF7|1|0|G|809
8BF7|1|0|U|810
8BF7|1|0|U|811
8BF7|1|0|C|812
*
8BF7|1|0|G|1195
8BF7|1|0|C|1196
*
8BF7|1|0|G|1250
8BF7|1|0|C|1251
8BF7|1|0|G|1252
8BF7|1|0|A|1253
8BF7|1|0|A|1254
8BF7|1|0|U|1255
8BF7|1|0|G|1256
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
- Chain d
- 50S ribosomal protein L35
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