J5_8BGH_008

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8BGH|1|2|A|60, 8BGH|1|2|A|109, 8BGH|1|2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BGH_008 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1555

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8BGH|1|2|C|58
8BGH|1|2|A|59
8BGH|1|2|A|60
8BGH|1|2|G|61
*
8BGH|1|2|C|106
8BGH|1|2|G|107
8BGH|1|2|G|108
8BGH|1|2|A|109
8BGH|1|2|C|110
8BGH|1|2|G|111
8BGH|1|2|G|112
8BGH|1|2|G|113
*
8BGH|1|2|C|314
8BGH|1|2|A|315
8BGH|1|2|C|316
*
8BGH|1|2|G|337
8BGH|1|2|A|338
8BGH|1|2|C|339
*
8BGH|1|2|G|350
8BGH|1|2|G|351
8BGH|1|2|C|352
8BGH|1|2|A|353
8BGH|1|2|G|354

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain H

50S ribosomal protein L14

Chain t

30S ribosomal protein S16

Chain x

30S ribosomal protein S20