J5_8BHF_008
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8BHF|1|A3|U|55, 8BHF|1|A3|A|92, 8BHF|1|A3|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BHF_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.056
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BHF|1|A3|C|53
8BHF|1|A3|A|54
8BHF|1|A3|U|55
8BHF|1|A3|G|56
*
8BHF|1|A3|C|89
8BHF|1|A3|G|90
8BHF|1|A3|A|91
8BHF|1|A3|A|92
8BHF|1|A3|U|93
8BHF|1|A3|G|94
8BHF|1|A3|G|95
8BHF|1|A3|C|96
*
8BHF|1|A3|G|434
8BHF|1|A3|A|435
8BHF|1|A3|G|436
*
8BHF|1|A3|C|457
8BHF|1|A3|A|458
8BHF|1|A3|C|459
*
8BHF|1|A3|G|470
8BHF|1|A3|G|471
8BHF|1|A3|C|472
8BHF|1|A3|A|473
8BHF|1|A3|G|474
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain F3
- 40S ribosomal protein S4
- Chain H3
- 40S ribosomal protein S6
- Chain I1
- 60S ribosomal protein L23
- Chain J1
- TRASH domain-containing protein
- Chain J3
- 40S ribosomal protein S8
- Chain K3
- Ribosomal protein S9 (Predicted)
- Chain Z3
- 40S ribosomal protein S24
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