3D structure

PDB id
8BHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.37 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
8BHP|1|0|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8BHP_003 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.1156
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

8BHP|1|0|C|584
8BHP|1|0|G|585
8BHP|1|0|A|586
8BHP|1|0|C|587
8BHP|1|0|U|588
8BHP|1|0|U|589
*
8BHP|1|0|A|668
8BHP|1|0|G|669
8BHP|1|0|A|670
8BHP|1|0|C|671
*
8BHP|1|0|G|809
8BHP|1|0|U|810
8BHP|1|0|U|811
8BHP|1|0|C|812
*
8BHP|1|0|G|1195
8BHP|1|0|C|1196
*
8BHP|1|0|G|1250
8BHP|1|0|C|1251
8BHP|1|0|G|1252
8BHP|1|0|A|1253
8BHP|1|0|A|1254
8BHP|1|0|U|1255
8BHP|1|0|G|1256

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain C
50S ribosomal protein L4
Chain I
50S ribosomal protein L15
Chain N
50S ribosomal protein L20
Chain O
50S ribosomal protein L21
Chain d
50S ribosomal protein L35

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2766 s