J5_8BQD_007
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8BQD|1|BQ|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BQD_007 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0631
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BQD|1|BQ|G|658
8BQD|1|BQ|G|659
8BQD|1|BQ|A|660
8BQD|1|BQ|G|661
8BQD|1|BQ|U|662
8BQD|1|BQ|C|663
*
8BQD|1|BQ|G|799
8BQD|1|BQ|G|800
8BQD|1|BQ|A|801
8BQD|1|BQ|C|802
*
8BQD|1|BQ|G|941
8BQD|1|BQ|U|942
8BQD|1|BQ|U|943
8BQD|1|BQ|C|944
*
8BQD|1|BQ|G|1375
8BQD|1|BQ|C|1376
*
8BQD|1|BQ|G|1431
8BQD|1|BQ|C|1432
8BQD|1|BQ|A|1433
8BQD|1|BQ|G|1434
8BQD|1|BQ|A|1435
8BQD|1|BQ|U|1436
8BQD|1|BQ|C|1437
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
- Chain BE
- RPL4A isoform 1
- Chain BG
- RPL32 isoform 1
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: