J5_8BQD_008
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8BQD|1|BQ|U|719, 8BQD|1|BQ|A|784, 8BQD|1|BQ|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BQD_008 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0934
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_23272.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8BQD|1|BQ|C|675
8BQD|1|BQ|G|676
8BQD|1|BQ|A|677
8BQD|1|BQ|G|678
*
8BQD|1|BQ|C|702
8BQD|1|BQ|G|703
8BQD|1|BQ|U|704
8BQD|1|BQ|A|705
8BQD|1|BQ|A|706
*
8BQD|1|BQ|U|713
8BQD|1|BQ|G|714
8BQD|1|BQ|A|715
8BQD|1|BQ|A|716
8BQD|1|BQ|C|717
8BQD|1|BQ|G|718
8BQD|1|BQ|U|719
8BQD|1|BQ|A|720
8BQD|1|BQ|G|721
*
8BQD|1|BQ|C|749
8BQD|1|BQ|G|750
8BQD|1|BQ|A|751
*
8BQD|1|BQ|U|782
8BQD|1|BQ|A|783
8BQD|1|BQ|A|784
8BQD|1|BQ|G|785
8BQD|1|BQ|A|786
8BQD|1|BQ|G|787
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AC
- 60S ribosomal protein L36-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AR
- 60S ribosomal protein L28
- Chain AV
- 60S ribosomal protein L29
- Chain BB
- 60S ribosomal protein L18-A
- Chain BE
- RPL4A isoform 1
Coloring options: