J5_8BR8_002
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GGAGCC*GGGC*GUUG*CC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8BR8|1|Lt|U|1124
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BR8_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0952
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BR8|1|Lt|G|406
8BR8|1|Lt|G|407
8BR8|1|Lt|A|408
8BR8|1|Lt|G|409
8BR8|1|Lt|C|410
8BR8|1|Lt|C|411
*
8BR8|1|Lt|G|516
8BR8|1|Lt|G|517
8BR8|1|Lt|G|518
8BR8|1|Lt|C|519
*
8BR8|1|Lt|G|658
8BR8|1|Lt|U|659
8BR8|1|Lt|U|660
8BR8|1|Lt|G|661
*
8BR8|1|Lt|C|1062
8BR8|1|Lt|C|1063
*
8BR8|1|Lt|G|1119
8BR8|1|Lt|C|1120
8BR8|1|Lt|A|1121
8BR8|1|Lt|G|1122
8BR8|1|Lt|A|1123
8BR8|1|Lt|U|1124
8BR8|1|Lt|C|1125
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LC
- Ribosomal protein L4
- Chain LD
- 5.8S rRNA
- Chain LM
- 60S ribosomal protein L13
- Chain LO
- Ribosomal protein L15
- Chain Lb
- Ribosomal protein L27a
- Chain Lf
- Ribosomal protein L32
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