J5_8BR8_008
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CAUG*CGGACGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8BR8|1|St|A|80, 8BR8|1|St|C|337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BR8_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1016
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BR8|1|St|C|53
8BR8|1|St|A|54
8BR8|1|St|U|55
8BR8|1|St|G|56
*
8BR8|1|St|C|77
8BR8|1|St|G|78
8BR8|1|St|G|79
8BR8|1|St|A|80
8BR8|1|St|C|81
8BR8|1|St|G|82
8BR8|1|St|G|83
8BR8|1|St|C|84
*
8BR8|1|St|G|299
8BR8|1|St|A|300
8BR8|1|St|G|301
*
8BR8|1|St|C|322
8BR8|1|St|A|323
8BR8|1|St|C|324
*
8BR8|1|St|G|335
8BR8|1|St|G|336
8BR8|1|St|C|337
8BR8|1|St|A|338
8BR8|1|St|G|339
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain LW
- Ribosomal protein L23
- Chain SE
- 40S ribosomal protein S4
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SK
- Ribosomal protein S9
- Chain Sb
- Ribosomal protein S24
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