J5_8BTK_001

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

8BTK|1|A2|C|594

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BTK_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1395

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8BTK|1|A2|C|30
8BTK|1|A2|U|31
8BTK|1|A2|U|32
8BTK|1|A2|G|33
8BTK|1|A2|PSU|34
*
8BTK|1|A2|A|522
8BTK|1|A2|A|523
8BTK|1|A2|A|524
8BTK|1|A2|U|525
8BTK|1|A2|A|526
8BTK|1|A2|A|527
8BTK|1|A2|C|528
*
8BTK|1|A2|G|559
8BTK|1|A2|G|560
8BTK|1|A2|A|561
8BTK|1|A2|A|562
8BTK|1|A2|U|563
8BTK|1|A2|G|564
*
8BTK|1|A2|C|593
8BTK|1|A2|C|594
8BTK|1|A2|A|595
8BTK|1|A2|U|596
*
8BTK|1|A2|A|642
8BTK|1|A2|U|643
8BTK|1|A2|A|644
8BTK|1|A2|OMG|645

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Aw

40S ribosomal protein S23