J5_8BUU_007
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8BUU|1|A|U|2105, 8BUU|1|A|G|2457, 8BUU|1|A|G|2458, 8BUU|1|A|A|2459, 8BUU|1|A|U|2460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BUU_007 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1143
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8BUU|1|A|U|2103
8BUU|1|A|U|2104
8BUU|1|A|U|2105
8BUU|1|A|A|2106
*
8BUU|1|A|U|2272
8BUU|1|A|U|2273
8BUU|1|A|U|2274
8BUU|1|A|G|2275
*
8BUU|1|A|C|2287
8BUU|1|A|G|2288
*
8BUU|1|A|C|2310
8BUU|1|A|G|2311
*
8BUU|1|A|C|2456
8BUU|1|A|G|2457
8BUU|1|A|G|2458
8BUU|1|A|A|2459
8BUU|1|A|U|2460
8BUU|1|A|A|2461
8BUU|1|A|A|2462
8BUU|1|A|A|2463
8BUU|1|A|A|2464
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain 9
- ExpZ
- Chain C
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
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