J5_8C00_003
3D structure
- PDB id
- 8C00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8C00|1|2|U|56, 8C00|1|2|A|93, 8C00|1|2|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8C00_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1319
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8C00|1|2|C|54
8C00|1|2|A|55
8C00|1|2|U|56
8C00|1|2|G|57
*
8C00|1|2|C|90
8C00|1|2|G|91
8C00|1|2|A|92
8C00|1|2|A|93
8C00|1|2|U|94
8C00|1|2|G|95
8C00|1|2|G|96
8C00|1|2|C|97
*
8C00|1|2|G|386
8C00|1|2|A|387
8C00|1|2|G|388
*
8C00|1|2|C|409
8C00|1|2|A|410
8C00|1|2|C|411
*
8C00|1|2|G|422
8C00|1|2|G|423
8C00|1|2|C|424
8C00|1|2|A|425
8C00|1|2|G|426
Current chains
- Chain 2
- 18S rRNA precursor
Nearby chains
- Chain S
- 40S ribosomal protein S4-A
- Chain T
- 40S ribosomal protein S6-A
- Chain V
- 40S ribosomal protein S8-A
- Chain W
- 40S ribosomal protein S9-A
- Chain d
- 40S ribosomal protein S24-A
- Chain t
- Ribosome biogenesis protein TSR1
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