J5_8C83_001

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8C83|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8C83_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0785

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8C83|1|2|C|31
8C83|1|2|U|32
8C83|1|2|U|33
8C83|1|2|G|34
8C83|1|2|U|35
*
8C83|1|2|A|473
8C83|1|2|A|474
8C83|1|2|A|475
8C83|1|2|U|476
8C83|1|2|A|477
8C83|1|2|A|478
8C83|1|2|C|479
*
8C83|1|2|G|509
8C83|1|2|G|510
8C83|1|2|A|511
8C83|1|2|A|512
8C83|1|2|U|513
8C83|1|2|G|514
*
8C83|1|2|C|543
8C83|1|2|A|544
8C83|1|2|A|545
8C83|1|2|U|546
*
8C83|1|2|A|592
8C83|1|2|U|593
8C83|1|2|A|594
8C83|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A