3D structure

PDB id
8C94 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
8C94|1|A|A|532, 8C94|1|A|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8C94_002 not in the Motif Atlas
Homologous match to J5_5J7L_014
Geometric discrepancy: 0.1443
The information below is about J5_5J7L_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8C94|1|A|C|531
8C94|1|A|A|532
8C94|1|A|G|533
*
8C94|1|A|C|560
8C94|1|A|G|561
8C94|1|A|U|562
8C94|1|A|A|563
8C94|1|A|C|564
*
8C94|1|A|G|577
8C94|1|A|G|578
8C94|1|A|G|579
*
8C94|1|A|C|1261
8C94|1|A|A|1262
*
8C94|1|A|U|2017
8C94|1|A|G|2018

Current chains

Chain A
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain S
50S ribosomal protein L22

Coloring options:


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