J5_8CAM_004

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8CAM|1|a|U|1758, 8CAM|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CAM_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0374

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CAM|1|a|G|1674
8CAM|1|a|C|1675
8CAM|1|a|A|1676
8CAM|1|a|A|1677
8CAM|1|a|A|1678
8CAM|1|a|A|1679
8CAM|1|a|U|1680
8CAM|1|a|G|1681
8CAM|1|a|G|1682
*
8CAM|1|a|C|1706
8CAM|1|a|G|1707
*
8CAM|1|a|U|1751
8CAM|1|a|C|1752
*
8CAM|1|a|G|1756
8CAM|1|a|A|1757
8CAM|1|a|U|1758
8CAM|1|a|A|1759
8CAM|1|a|C|1760
8CAM|1|a|C|1761
8CAM|1|a|A|1762
8CAM|1|a|G|1763
8CAM|1|a|C|1764
*
8CAM|1|a|G|1988
8CAM|1|a|G|1989
8CAM|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14

Chain o

Large ribosomal subunit protein bL19