J5_8CAS_001
3D structure
- PDB id
- 8CAS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 8CAS|1|2|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CAS_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.0835
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8CAS|1|2|C|31
8CAS|1|2|U|32
8CAS|1|2|U|33
8CAS|1|2|G|34
8CAS|1|2|U|35
*
8CAS|1|2|A|473
8CAS|1|2|A|474
8CAS|1|2|A|475
8CAS|1|2|U|476
8CAS|1|2|A|477
8CAS|1|2|A|478
8CAS|1|2|C|479
*
8CAS|1|2|G|509
8CAS|1|2|G|510
8CAS|1|2|A|511
8CAS|1|2|A|512
8CAS|1|2|U|513
8CAS|1|2|G|514
*
8CAS|1|2|C|543
8CAS|1|2|A|544
8CAS|1|2|A|545
8CAS|1|2|U|546
*
8CAS|1|2|A|592
8CAS|1|2|U|593
8CAS|1|2|A|594
8CAS|1|2|G|595
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain W
- 40S ribosomal protein S9-A
- Chain c
- 40S ribosomal protein S23-A
- Chain g
- 40S ribosomal protein S30-A
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
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