J5_8CEH_007

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8CEH|1|c|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CEH_007 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0773

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CEH|1|c|C|31
8CEH|1|c|U|32
8CEH|1|c|U|33
8CEH|1|c|G|34
8CEH|1|c|U|35
*
8CEH|1|c|A|473
8CEH|1|c|A|474
8CEH|1|c|A|475
8CEH|1|c|U|476
8CEH|1|c|A|477
8CEH|1|c|A|478
8CEH|1|c|C|479
*
8CEH|1|c|G|509
8CEH|1|c|G|510
8CEH|1|c|A|511
8CEH|1|c|A|512
8CEH|1|c|U|513
8CEH|1|c|G|514
*
8CEH|1|c|C|543
8CEH|1|c|A|544
8CEH|1|c|A|545
8CEH|1|c|U|546
*
8CEH|1|c|A|592
8CEH|1|c|U|593
8CEH|1|c|A|594
8CEH|1|c|G|595

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A