J5_8CF5_007
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 8CF5|1|c|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CF5_007 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.0902
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8CF5|1|c|C|31
8CF5|1|c|U|32
8CF5|1|c|U|33
8CF5|1|c|G|34
8CF5|1|c|U|35
*
8CF5|1|c|A|473
8CF5|1|c|A|474
8CF5|1|c|A|475
8CF5|1|c|U|476
8CF5|1|c|A|477
8CF5|1|c|A|478
8CF5|1|c|C|479
*
8CF5|1|c|G|509
8CF5|1|c|G|510
8CF5|1|c|A|511
8CF5|1|c|A|512
8CF5|1|c|U|513
8CF5|1|c|G|514
*
8CF5|1|c|C|543
8CF5|1|c|A|544
8CF5|1|c|A|545
8CF5|1|c|U|546
*
8CF5|1|c|A|592
8CF5|1|c|U|593
8CF5|1|c|A|594
8CF5|1|c|G|595
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 40S ribosomal protein S30-A
- Chain m
- 40S ribosomal protein S9-A
- Chain z
- 40S ribosomal protein S23-A
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